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  • Year in Review
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INTESTINAL STEM CELLS IN 2020

Modelling intestinal inflammation and infection using ‘mini-gut’ organoids

In 2020, major advances to the understanding of gastrointestinal inflammatory and infectious disease have been made using ‘mini-gut’ organoids. Key findings include the discovery of somatic inflammatory gene mutations in ulcerative colitis epithelium, a unique mutational signature in colorectal cancer caused by genotoxic Escherichia coli, and infection of intestinal organoids by SARS-CoV-2.

Key advances

  • Evolution of somatic inflammatory gene mutations targeting IL-17 signalling occurs during chronic tissue inflammation in patients with ulcerative colitis3.

  • A distinct mutational signature caused by exposure to genotoxic colibactin-producing pks+ Escherichia coli is found in a subset of colorectal cancers5.

  • Active SARS-CoV-2 infection and replication is possible in human and bat intestinal organoids7.

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Fig. 1: Key applications of patient-derived organoids.

References

  1. Sato, T. et al. Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche. Nature 459, 262–265 (2009).

    Article  CAS  Google Scholar 

  2. Corro, C., Novellasdemunt, L. & Li, V. S. W. A brief history of organoids. Am. J. Physiol. Cell Physiol. 319, C151–C165 (2020).

    Article  CAS  Google Scholar 

  3. Nanki, K. et al. Somatic inflammatory gene mutations in human ulcerative colitis epithelium. Nature 577, 254–259 (2020).

    Article  CAS  Google Scholar 

  4. Kakiuchi, N. et al. Frequent mutations that converge on the NFKBIZ pathway in ulcerative colitis. Nature 577, 260–265 (2020).

    Article  CAS  Google Scholar 

  5. Pleguezuelos-Manzano, C. et al. Mutational signature in colorectal cancer caused by genotoxic pks(+) E. coli. Nature 580, 269–273 (2020).

    Article  CAS  Google Scholar 

  6. Lee-Six, H. et al. The landscape of somatic mutation in normal colorectal epithelial cells. Nature 574, 532–537 (2019).

    Article  CAS  Google Scholar 

  7. Zhou, J. et al. Infection of bat and human intestinal organoids by SARS-CoV-2. Nat. Med. 26, 1077–1083 (2020).

    Article  CAS  Google Scholar 

  8. Lamers, M. M. et al. SARS-CoV-2 productively infects human gut enterocytes. Science 369, 50–54 (2020).

    Article  CAS  Google Scholar 

  9. Meran, L. et al. Engineering transplantable jejunal mucosal grafts using patient-derived organoids from children with intestinal failure. Nat. Med. 26, 1593–1601 (2020).

    Article  CAS  Google Scholar 

  10. Nikolaev, M. et al. Homeostatic mini-intestines through scaffold-guided organoid morphogenesis. Nature 585, 574–578 (2020).

    Article  Google Scholar 

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Acknowledgements

The laboratory of V.S.W.L. is funded by the Francis Crick Institute, which receives its core funding from Cancer Research UK (FC001105), the UK Medical Research Council (FC001105) and the Wellcome Trust (FC001105).

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Correspondence to Vivian S. W. Li.

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Li, V.S.W. Modelling intestinal inflammation and infection using ‘mini-gut’ organoids. Nat Rev Gastroenterol Hepatol 18, 89–90 (2021). https://doi.org/10.1038/s41575-020-00391-4

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