Fig. 4: Long-read dataset benchmarks.
From: Improving metagenome binning by integrating intrinsic features and taxonomy
a, Human gut and sludge dataset benchmarks for different metagenomic binners. The performance was measured as the number of HQ bins (that is, bins evaluated by CheckM2 to have >90% completeness and <5% contamination, while including GUNC filtering). VAMB and TaxVAMB are presented with and without SCG-based DBSCAN reclustering. b, The phylogenetic diversity of VAMB and TaxVAMB HQ bins, using GTDBtk placement, as the unique number of taxa on each taxonomic rank. c, Visualization of GTDBtk placement for VAMB and TaxVAMB down to the species level, annotated by the color on the phylum level. The darker color in the annotation indicates that more HQ bins were recovered for this phylum. Red dots indicate novel species (unassigned by GTDBtk).
