Fig. 1: Overview of the Paired Omics Data Platform.
From: A community resource for paired genomic and metabolomic data mining
The PoDP links genomic and metabolomic data deposited in public repositories, accompanied by minimal metadata. The platform documents basic submitter information as well as accession numbers of the metabolome and genome data. Standardized logging of key experimental details enables users to better search and compare datasets, and user-defined labels of genome and experimental details (sections 3 and 4) enable straightforward submission of multiple links. The core of the platform consists of links between the genomic and metabolomic datasets and links between BGCs and MS/MS spectra, which facilitate data integration. PMID, PubMed ID; OD, optical density; CE, collision energy; SMILES, simplified molecular-input line-entry; IUPAC, International Union of Pure and Applied Chemistry; MS2, MS/MS fragmentation.
