Extended Data Fig. 6: Comparation of the performance between MetalNet and MIB.
From: Co-evolution-based prediction of metal-binding sites in proteomes by machine learning
a, Evaluation of the performance of MetalNet and MIB on a ‘prospective’ metalloprotein dataset that were deposited in PDB after 2016/08. b, Evaluation of the performance of MetalNet and MIB on this prospective metalloprotein dataset after proteins with one single sidechain as the liganding group were removed. In a and b, the calculated precision, recall and F1-scores for MetalNet and MIB were shown on the left in the table format for all metal-binding sites (‘All sites’), Zn-specific sites (‘Zn’), Mg/Ca-specific sites (‘Mg/Ca’) and the remaining sites (‘others’). The number of correct and incorrect predictions made by MetalNet and MIB were shown on the right in the venn diagram format with the ‘prospective’ metalloprotein dataset (‘PDB’) as the reference (the dataset can be found in Supplementary Dataset 3).
