Fig. 2: Chromosome-scale assembly and annotation of Catharanthus roseus.
From: Single-cell multi-omics in the medicinal plant Catharanthus roseus
a, Contact map of Hi-C reads revealing the eight chromosomes of C. roseus. Blue boxes represent pseudomolecules, green boxes represent contigs of the primary assembly and red color indicates Hi-C contacts. b, Assembly metrics of the v3 versus v2 C. roseus genome assembly. For the number of gaps and scaffolds, the v3 numbers represent the pseudochromosomes and the complete assembly (pseudochromosomes plus unanchored scaffolds). c, Gene and repetitive sequence density along the eight C. roseus chromosomes. Y axis values and color scales represent the number of representative gene models (first row) or repetitive sequences (>1-kb, second row) in 1-Mb resolution.
