Extended Data Fig. 9: Concordance of Random Forest scores with species-level partial correlations. | Nature Medicine

Extended Data Fig. 9: Concordance of Random Forest scores with species-level partial correlations.

From: Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

Extended Data Fig. 9: Concordance of Random Forest scores with species-level partial correlations.

Volcano plots of the scores assigned to each species by Random Forest and their partial correlation, showing an overall concordance between the two independent approaches. We considered the top 5 metadata variables for the six metadata categories: a, Foods, bacon (g) (corr. 0.49), garlic (g) (corr. 0.424), unsalted nuts (g) (0.422), dairy dessert (g) (corr. 0.421), salted nuts (g) (corr. 0.395). b, Food groups, nuts (corr. 0.468), tea and coffee (corr. 0.436), meat (corr. 0.42), legumes (corr. 0.374), vegetables (corr. 0.371). c, Nutrients, lactose (corr. 0.442), niacin (corr. 0.381), maltose (corr. 0.361), sucrose (corr. 0.344), total carbohydrates (corr. 0.324). d, Nutrients normalized by daily energy intake, magnesium (corr. 0.472), starch (corr. 0.436), total carbohydrates (corr. 0.422), non-starch polysaccharides (NSP) (corr. 0.421), lactose (corr. 0.414). e, Dietary patterns, healthy plant percentage (corr. 0.492), healthy PDI (corr. 0.472), hei score (corr. 0.47), HFD (corr. 0.408), total plants percentage (0.388). f, Lipoproteins, M-HDL-L 6 h rise (corr. 0.406), IDL-C 6 h (corr. 0.4), HDL-L 6 h rise (corr. 0.397), XL-HDL-C 0 h (corr. 0.395), Total Cholesterol 4 h rise (corr. 0.391).

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