Extended Data Fig. 3: Flow cytometry abundances of classical myeloid cell states.

(a) Gating strategy for determination of CD14 + mono, CD16 + mono, and dendritic cell abundance. (b) Correlation of fractional abundances defined by flow cytometry and scRNA-seq for each patient (n = 65 individuals). (c) Fractional abundance of the three cell types based on flow cytometry, grouped by disease state. Sample size (n) for each cohort is indicated in Fig. 1b. Boxes show the median and IQR for each patient cohort, with whiskers extending to 1.5 IQR in either direction from the top or bottom quartile.