Extended Data Fig. 5: Additional results on generated simulated datasets that resemble real datasets. | Nature Methods

Extended Data Fig. 5: Additional results on generated simulated datasets that resemble real datasets.

From: scMultiSim: simulation of single-cell multi-omics and spatial data guided by gene regulatory networks and cell–cell interactions

Extended Data Fig. 5

For all box/violin plots, centers=medians, boxes=Q1-Q3, whiskers= ± 1.5 IQR. We show the statistical properties of both modalities, scRNA-seq and scATAC-seq, for multi-omics datasets (10x Multiome and ISSAAC-seq). For the MERFISH and SeqFISH+ spatial dataset, we show only the RNA modality as it does not have the scATAC-seq data. For SeqFISH+, n= 523 for cells, n= 200 for genes, n= 3000 for ATAC. For MERFISH, n= 3000 for cells, n= 2000 for genes. For ISSAAC-seq, n= 3000 for cells, n= 1000 for genes, n= 3000 for ATAC.

Source data.

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