Extended Data Fig. 9: Supporting data for comparison of FXcryo-Cell and snRNA-seq. | Nature Methods

Extended Data Fig. 9: Supporting data for comparison of FXcryo-Cell and snRNA-seq.

From: FX-Cell: a method for single-cell RNA sequencing on difficult-to-digest and cryopreserved plant samples

Extended Data Fig. 9: Supporting data for comparison of FXcryo-Cell and snRNA-seq.

a, Comparative analysis of the atlases generated by traditional protoplasting-based scRNA-seq (red) snRNA-seq (grey), and FX-Cell (green). b, Annotation of integrated cell atlases shown in (a). c, UMAP plots displaying expression levels of wound-response genes across the three datasets from (a). Wound-response genes extracted from GO terms (GO: 0009611; Supplementary Table 2) were used as the gene set and analyzed using AUCell.

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