Extended Data Fig. 1: Accuracy of SNP calling and haplotype phasing.
From: SNP calling, haplotype phasing and allele-specific analysis with long RNA-seq reads
A, precision and recall for SNP calling on PacBio datasets between longcallR (circles) and Clair3-RNA (triangles). Colors represent different samples. Genomic SNPs from GIAB are taken as the ground truth. B, precision and recall for SNP calling on Nanopore datasets. C, Phasing switch error rates between longcallR-phase (green) and WhatsHap (yellow) across PacBio and Nanopore datasets. Trio-based HG002 SNP phasing from GIAB is taken as the ground truth. Lower switch error rates indicate higher phasing accuracy. D, Phasing hamming error rates in haplotype phasing.
