Abstract
We use connectome modeling to map polysynaptic fiber pathways underlying transcranial magnetic stimulation (TMS) therapy for depression. We propose putative cortical and subcortical routes that connect stimulation sites in the dorsolateral prefrontal cortex to the subgenual cingulate cortex via intermediate regions. Here we show that route length explains both TMS treatment response in two independent patient cohorts and the clinical efficacy of functional magnetic resonance imaging-guided TMS targeting. Our results illuminate the neuroanatomical basis of TMS therapy for depression.
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Data availability
Clinical data (TMS coordinates and rates of symptom improvement) from cohort I are publicly available as part of the Supplementary Information of ref. 6. Clinical data from cohort II (ACTRN12610001071011)7 remain subject to privacy and ethical restrictions. The two normative connectome datasets are publicly available through refs. 30,36. The publicly available data used in the analyses of the present manuscript can be found at https://github.com/caioseguin/tms_dep_pathways. Source data are provided with this paper.
Code availability
Code to reproduce the analyses of the present manuscript is available at https://github.com/caioseguin/tms_dep_pathways. Network communication models were computed using the Brain Connectivity Toolbox52. Surrogate connectomes were computed using code available through ref. 55.
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Acknowledgements
S.M.L. was supported by the Singapore National Medical Research Council (OFYIRG25jan-0049). J.L. was supported by the Brain and Mind Centre Research Development Grant, the USYD-Fudan Brain and Intelligence Science Alliance Flagship Research Program, the Moyira Elizabeth Vine Fund for Research into Schizophrenia Program and the ARC Discovery Project (DP240102161). L.P. was supported by the National Institute of Mental Health of the National Institutes of Health under award number R00MH127296. P.B.F. was supported by a National Health and Medical Research Council of Australia investigator grant (1193596). R.F.H.C. was supported by the Australian National Health and Medical Research Council (Emerging Leadership Investigator grant no. 2017527). A.Z. was supported by the Australian Research Council (Future Fellowship, FT220100091) and the Rebecca L. Cooper Foundation.
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Conceptualization: C.S., R.H.F.C. and A.Z. Methodology: C.S., S.M.L., R.F.B. and R.F.H.C. Formal analysis: C.S. Resources: C.S., S.M.L., R.F.B., E.J.C., M.G.P., J.L., L.P., P.B.F. and R.F.H.C. Data curation: R.F.B., P.B.F. and R.F.H.C. Visualizations: C.S. and S.M.L. Writing, original draft: C.S. Writing, review and editing: all authors.
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R.F.H.C. and A.Z. are involved in a not-for-profit clinical neuromodulation center (Queensland Neurostimulation Centre) that offers neuroimaging-guided neurotherapeutics. In the last 3 years, P.B.F. has received equipment for research from Brainsway. He has also acted as a founder and board member for TMS Clinics Australia and Resonance Therapeutics. The other authors declare no competing interests.
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Supplementary Figs. 1–19.
Source data
Source Data Fig. 1 (download XLSX )
1b, TMS and SGC coordinates; 1c, treatment response and DLPFC–SGC number of white matter hops (cohort I); 1d, Rmap values.
Source Data Fig. 2 (download XLSX )
2b, Distribution of DLPFC–SGC number of white matter hops; 2c, top mediators and paths.
Source Data Fig. 3 (download XLSX )
3c, DLPFC map of white matter hops to the SGC, Lausanne connectome; DLPFC map of functional connectivity to the SGC, Lausanne connectome. 3f, DLPFC map of white matter hops to the SGC, Schaefer connectome; DLPFC map of functional connectivity to the SGC, Schaefer connectome.
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Seguin, C., Mansour L., S., Betzel, R.F. et al. White matter pathways mediating dorsolateral prefrontal TMS therapy for depression. Nat Neurosci 29, 1048–1053 (2026). https://doi.org/10.1038/s41593-026-02248-6
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DOI: https://doi.org/10.1038/s41593-026-02248-6


