Table 4 Information on the repeat annotation in the A. yunnanensis genome assembly.
From: Chromosome-level genome assembly of Aquilaria yunnanensis
Type | Number of elements | Sequence length(bp) | Percentage of genome (%) | ||
|---|---|---|---|---|---|
Retroelements | LTR elements | Gypsy/DIRS1 | 183,375 | 323,373,188 | 38.18 |
Ty1/Copia | 56,266 | 53,943,205 | 6.37 | ||
Retroviral | 1,966 | 135,655 | 0.02 | ||
BEL/Pao | 1,794 | 663,112 | 0.08 | ||
Non-LTR elements | LINEs | 28,142 | 13,971,685 | 1.65 | |
SINEs | 1,312 | 117,378 | 0.01 | ||
Penelope | 641 | 163,742 | 0.02 | ||
Total of retroelements | 321,230 | 423,020,254 | 49.94 | ||
DNA transposons | 119,527 | 51,582,681 | 6.09 | ||
Rolling-circles | 6,767 | 5,761,739 | 0.68 | ||
Unclassified | 423,644 | 131,016,515 | 15.47 | ||
Total interspersed repeats | 605,783,192 | 71.52 | |||
Small RNA | 6181 | 15,840,470 | 1.87 | ||
Satellites | 2021 | 339,821 | 0.04 | ||
Simple repeats | 93,120 | 3,810,942 | 0.45 | ||
Low complexity | 17,451 | 863,140 | 0.10 | ||
Total | 1,099,317 | 632,352,644 | 74.65 | ||
