Table 4 Classification of repetitive elements in three geographical stocks of L. crocea genomes.
Repeat type | Nanhai | Mindong | Daiqu | |||
|---|---|---|---|---|---|---|
Length (bp) | Proportion in Genome (%) | Length (bp) | Proportion in Genome (%) | Length (bp) | Proportion in Genome (%) | |
DNA | 53,977,575 | 7.47 | 51,091,402 | 7.22 | 47,941,893 | 6.78 |
LINE | 25,457,058 | 3.52 | 23,771,962 | 3.36 | 23,326,575 | 3.3 |
SINE | 2,313,407 | 0.32 | 1,697,023 | 0.24 | 1,979,285 | 0.28 |
LTR | 47,735,601 | 6.6 | 32,061,757 | 4.53 | 29,002,078 | 4.1 |
Rolling-circles | 10,543,695 | 1.46 | 11,805,383 | 1.67 | 12,286,555 | 1.74 |
Satellites | 5,745,281 | 0.79 | 1,815,337 | 0.26 | 2,957,376 | 0.42 |
Simple Repeat | 754,355 | 0.1 | 327,963 | 0.05 | 147,572 | 0.02 |
Unknown | 73,100,583 | 10.11 | 89,247,179 | 12.61 | 92,194,487 | 13.05 |
Total | 219,627,555 | 30.39 | 211,818,077 | 29.92 | 209,836,019 | 29.69 |
