Table 6 Gene structure and function annotation in three geographical stocks of L. crocea genomes.
Gene structure Annotation | Nanhai | Mindong | Daiqu |
|---|---|---|---|
Number of protein-coding genes | 36,151 | 36,151 | 33,013 |
Average transcript length (bp) | 8,292.48 | 9,023.64 | 8,893.20 |
Average exons per gene | 7.32 | 7.69 | 7.64 |
Average exon length (bp) | 167.36 | 166.07 | 168.38 |
Average CDS length (bp) | 1,231.69 | 1,285.40 | 1,294.75 |
Average intron length (bp) | 1,119.10 | 1,171.66 | 1,144.78 |
Gene function Annotation | Number (Percent) | ||
Nanhai | Mindong | Daiqu | |
SwissProt | 21,633 (59.84%) | 21,372 (59.12%) | 21,552 (65.28%) |
Nr | 27,899 (77.17%) | 26,646 (73.71%) | 27,073 (82.01%) |
KEGG | 16,443 (45.48%) | 16,319 (45.14%) | 16,395 (49.66%) |
InterPro | 20,852 (57.68%) | 20,580 (56.93%) | 20,781 (62.95%) |
TrEMBL | 27,762 (76.79%) | 26,539 (73.41%) | 26,988 (81.75%) |
Annotated | 28,133 (77.82%) | 26,851 (74.27%) | 27,279 (82.63%) |
Unannotated | 8,018 (22.18%) | 9,300 (25.73%) | 5,734 (17.37%) |
