Table 6 Transposable elements (TEs) in the MN genome assembly.
From: Chromosome-level genome assembly of Malus niedzwetzkyana, the mother of Rosybloom crabapple
Type | RepeatMasker TEs Length (bp) | RepeatMasker TEs % in genome | RepeatProteinMask TEs Length (bp) | RepeatProteinMask TEs % in genome | De novo Length (bp) | De novo % in genome | Combined TEs Length (bp) | Combined TEs % in genome |
|---|---|---|---|---|---|---|---|---|
DNA | 62,401,485 | 9.28 | 1,363,558 | 0.20 | 14,975,223 | 2.23 | 70,826,322 | 10.53 |
LINE | 31,249,183 | 4.65 | 10,075,754 | 1.50 | 26,842,227 | 3.99 | 39,814,716 | 5.92 |
SINE | 467,779 | 0.07 | 0 | 0.00 | 0 | 0.00 | 467,779 | 0.07 |
LTR | 254,716,475 | 37.87 | 83,146,451 | 12.36 | 287,457,149 | 42.74 | 355,284,532 | 52.82 |
Other | 1,095 | 0.00 | 0 | 0.00 | 0 | 0.00 | 1,095 | 0.00 |
Unknown | 1,442,787 | 0.21 | 198 | 0.00 | 27,736,830 | 4.12 | 28,508,974 | 4.24 |
Total TE | 346,735,799 | 51.55 | 94,583,373 | 14.06 | 347,864,288 | 51.72 | 472,502,892 | 70.25 |
