Table 5 Putative species-specific genes identified in CmTU1867, CmUKMEL1 and CpBGF.

From: A new chromosome-level genome assembly and annotation of Cryptosporidium meleagridis

Species and Strain	Singleton IDs*	Coordinates	Singleton IDs	Coordinates
Cryptosporidium meleagridis TU1867	cmbei_100110	41716–42914	cmbei_7005530	24550–24696
	cmbei_1002880	642026–642454	cmbei_7002513	606698–607360
	cmbei_2002120	429587–429678	cmbei_7004665	1076111–1076549
	cmbei_2003280	683302–683667	cmbei_7005006	1168993–1169022
	cmbei_300370	104263–104549	cmbei_7005103	1195849–1197118
	cmbei_3001410	398831–399157	cmbei_8001763	493894–494274
	cmbei_3002380	622418–622869	cmbei_8004050	1022925–1023056
	cmbei_3002720	682534–682922	cmbei_8005515	1362994–1364327
	cmbei_40023	1100198–1100721	cmbei_8005530	1364036–1364251
	cmbei_4004070	104218–104513	cmbei_9000040	12454–13368
	cmbei_6004980	1164441–1164829	cmbei_120010	596–1065
	cmbei_6004993	1166119–1166454
Cryptosporidium meleagridis UKMEL1	CmeUKMEL1_00600 (JIBK01000002)	283378–283705	CmeUKMEL1_10305 (JIBK01000034)	58–677
	CmeUKMEL1_01660 (JIBK01000003)	23133–23597	CmeUKMEL1_14005 (JIBK01000048)	8–503
	CmeUKMEL1_06150 (JIBK01000010)	229933–231820	CmeUKMEL1_15125 (JIBK01000048)	526051–526433
	CmeUKMEL1_06155 (JIBK01000011)	204–1517	CmeUKMEL1_16475 (JIBK01000050)	54883–55439
	CmeUKMEL1_08805 (JIBK01000020)	259–555	CmeUKMEL1_17330 (JIBK01000051)	75631–76029
	CmeUKMEL1_09820 (JIBK01000027)	33768–33989
Cryptosporidium parvum IOWA BGF	cpbgf_100150	83322–86482	cpbgf_600530	120556–122982
	cpbgf_100733	222029–222922	cpbgf_6001250	299808–301409
	cpbgf_1002800	655776–656402	cpbgf_5004500	721443–722609
	cpbgf_1002887	672381–674544	cpbgf_5004480	730965–737726
	cpbgf_1002880	672573–674537	cpbgf_5005540	925181–931260
	cpbgf_20010	101359–102994	cpbgf_4002090	1100521–1101041
	cpbgf_2003690	831932–832447	cpbgf_6002110	501537–505218
	cpbgf_300370	106882–107196	cpbgf_6002143	511286–512806
	cpbgf_3001410	404488–404820	cpbgf_6004100	952703–953008
	cpbgf_3002290	608641–609101	cpbgf_6004980	1179722–1180105
	cpbgf_3002310	611727–612195	cpbgf_7005800	25041–26437
	cpbgf_3002700	684838–685643	cpbgf_7002513	631350–632023
	cpbgf_4004070	106195–106509	cpbgf_7004665	1102082–1102518
	cpbgf_4002093	263323–263861	cpbgf_7005103	1222657–1224777
	cpbgf_4002190	282619–284271	cpbgf_8001763	473062–473454
	cpbgf_40023	1100198–1100721	cpbgf_8002510	656383–657238
	cpbgf_500470	140861–141394	cpbgf_8003056	790111–790462
	cpbgf_5002280	513213–513842	cpbgf_8003550	895329–896309
	cpbgf_5002830	644601–651482	cpbgf_8004050	1104236–1004847

*Gene IDs in bold are presumed subtelomeric genes because they exist within the first or last 25 annotated genes on a chromosome (non-chromosomal contigs, i.e CmUKMEL1, were excluded from this analysis since the ends of chromosomes are unknown).

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Table 5 Putative species-specific genes identified in CmTU1867, CmUKMEL1 and CpBGF.

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