Table 2 Statistics of repetitive elements in the flat-headed loach genome.
From: Chromosome-level haplotype-resolved genome of the tropical loach (Oreonectes platycephalus)
Type | Haplotype A | Haplotype B | ||||
|---|---|---|---|---|---|---|
Number | Length (bp) | Percentage (%) | Number | Length (bp) | Percentage (%) | |
SINEs | 27,602 | 4,140,573 | 0.73 | 29,802 | 4,501,265 | 0.87 |
LINEs | 55,011 | 17,793,547 | 3.14 | 49,434 | 15,376,875 | 2.95 |
LTR elements | 70,810 | 26,378,376 | 4.66 | 62,166 | 23,136,606 | 4.44 |
DNA transposons | 596,711 | 84,953,962 | 15.02 | 567,191 | 79,412,494 | 15.24 |
Rolling-circles | 15,828 | 3,621,488 | 0.65 | 13,109 | 2,919,409 | 0.56 |
Small RNA | 24,305 | 3,477,478 | 0.61 | 24,546 | 4,303,223 | 0.82 |
Satellites | 11,827 | 2,343,133 | 0.42 | 8,868 | 1,462,441 | 0.28 |
Simple repeats | 174,197 | 9,276,429 | 1.64 | 156,648 | 8,178,734 | 1.57 |
Low complexity | 21,075 | 1,072,541 | 0.19 | 19,883 | 1,012,944 | 0.19 |
Unclassified | 236,546 | 54,994,701 | 9.72 | 188,874 | 41,719,117 | 8.00 |
