Table 5 Summary of non-coding RNAs in the flat-headed loach genome.
From: Chromosome-level haplotype-resolved genome of the tropical loach (Oreonectes platycephalus)
Type | Haplotype A | Haplotype B | |||||||
|---|---|---|---|---|---|---|---|---|---|
Copy number | Average length (bp) | Total length (bp) | Percentage (%) of genome | Copy number | Average length (bp) | Total length (bp) | Percentage (%) of genome | ||
miRNA | 904 | 72.21 | 65284 | 0.011 | 629 | 73.5 | 46235 | 0.008 | |
tRNA | 7435 | 75.30 | 559875 | 0.098 | 6449 | 75.36 | 486057 | 0.093 | |
rRNA | 18 s | 3 | 1098.69 | 3296 | 0.00 | 8 | 1692.38 | 13539 | 0.00 |
28 s | 5 | 1069.20 | 5346 | 0.00 | 11 | 2835.09 | 31186 | 0.00 | |
5.8 s | 0 | 0 | 0 | 0 | 6 | 918 | 153 | 0 | |
5 s | 5062 | 113.77 | 575900 | 0.10 | 664 | 112.2 | 74499 | 0.01 | |
snRNA | CD-box | 189 | 140.81 | 26614 | 0.0047 | 282 | 166.89 | 47065 | 0.009 |
HACA-box | 67 | 151.17 | 10129 | 0.0017 | 63 | 152.74 | 9623 | 0.0018 | |
splicing | 698 | 138.22 | 96479 | 0.017 | 448 | 124.49 | 55773 | 0.0107 | |
scaRNA | 11 | 198.09 | 2179 | 0.0003 | 11 | 198.09 | 2179 | 0.0004 | |
