Table 2 Repeat contents annotations results.
From: Chromosome-level and haplotype-resolved genome assembly of Bougainvillea glabra
Classification | Hap1 | Hap2 | ||||
|---|---|---|---|---|---|---|
Number | Size (bp) | Percent | Number | Size (bp) | Percent | |
LTR/Copia | 525,177 | 255,503,876 | 8.84% | 338,167 | 268,989,071 | 9.42% |
LTR/Gypsy | 868,132 | 892,576,947 | 30.89% | 920,153 | 850,036,012 | 29.77% |
LTR/Unknown | 1,093,894 | 589,223,981 | 20.39% | 1,043,416 | 570,188,514 | 19.97% |
TIR/CACTA | 261,282 | 131,486,540 | 4.55% | 306,735 | 165,976,583 | 5.81% |
TIR/Mutator | 329,686 | 113,459,843 | 3.93% | 291,915 | 108,381,459 | 3.80% |
TIR/PIF_Harbinger | 105,099 | 43,761,516 | 1.51% | 129,656 | 56,664,948 | 1.98% |
TIR/Tc1_Mariner | 108,277 | 47,518,684 | 1.64% | 95,797 | 31,052,663 | 1.09% |
TIR/hAT | 146,638 | 56,698,933 | 1.96% | 131,038 | 50,279,395 | 1.76% |
TIR/pPolinton | 34 | 9,699 | 0.00% | — | — | — |
Non-LTR/LINE_element | 7,669 | 3,817,192 | 0.13% | 8,508 | 4,173,384 | 0.15% |
Non-LTR/Unknown | 1,018 | 559,528 | 0.02% | 1,563 | 1,799,796 | 0.06% |
NonTIR/Helitron | 138,981 | 71,101,243 | 2.46% | 127,688 | 63,122,815 | 2.21% |
Repeat_region | 332,820 | 111,230,926 | 3.85% | 364,063 | 110,572,065 | 3.87% |
Total | 3,918,707 | 2,316,948,908 | 80.19% | 3,758,699 | 2,281,236,705 | 79.89% |
