Table 4 Statistics of gene prediction.
From: Chromosome-level genome assembly and annotation of Barbel chub Squaliobarbus curriculus
Method | Software | Species | Gene number |
|---|---|---|---|
Ab initio | Augustus | — | 26,240 |
Homology-based | GeMoMa | Ctenopharyngodon idella | 27,488 |
Danio rerio | 26,830 | ||
Megalobrama amblycephala | 30,335 | ||
Oreochromis niloticus | 25,475 | ||
Xiphophorus maculatus | 22,806 | ||
Transcriptome-based | HISAT2 + StringTie | — | 33,108 |
TACO | — | 29,567 | |
EvidenceModeler | — | 28,329 |
