Table 4 The summary of repeat sequence statistics of A. medius genome.
From: Chromosome-level reference genome and annotation of the Arctic fish Anisarchus medius
Repeat type | Repeat size (bp) |
|---|---|
Low_complexity | 2,247,372 |
LINE/L1-Tx1 | 163,046 |
LTR/DIRS | 423,042 |
DNA/TcMar-ISRm11 | 232,981 |
DNA/TcMar-Tc1 | 2,091,901 |
DNA/hAT-Charlie | 6,255,762 |
Unknown | 165,243,169 |
DNA/hAT-Ac | 1,456,899 |
LTR/ERV1 | 772,382 |
DNA/PIF-Harbinger | 60,382 |
LTR/ERV-Foamy | 144,344 |
DNA/hAT-Tol2 | 751,286 |
DNA/PiggyBac | 479,504 |
DNA/hAT-hAT5 | 149,117 |
LINE/L1 | 1,736,919 |
LINE/Proto2 | 240,675 |
DNA/Academ | 249,070 |
LTR/Pao | 432,506 |
LINE | 65,089 |
DNA/CMC-EnSpm | 16,213 |
DNA/hAT-Tip100 | 4,163,103 |
LINE/L2 | 5,271,186 |
DNA/hAT-Blackjack | 57,277 |
LTR/Gypsy | 1,853,475 |
LINE/Rex-Babar | 4,963,062 |
LINE/RTE-X | 601,957 |
LINE/Jockey | 86,961 |
LINE/I-Nimb | 1,263,675 |
LTR | 97,679 |
RC/Helitron | 33,654 |
LINE/RTE-BovB | 2,203,609 |
Simple_repeat | 36,787,604 |
LTR/Ngaro | 237,122 |
Total | 240,832,023 |
