Table 4 Classification statistics of repeated sequences in the genome of large-scale loach.
Repeat Classes | Number of Elements | Length (bp) | Percentage of genome (%) | |
|---|---|---|---|---|
Retro elements | 1. SINEs | 43,731 | 6,592,529 | 0.63 |
2. LINEs | 87,924 | 21,417,910 | 2.05 | |
3. LTR elements | 83,079 | 40,285,557 | 3.86 | |
Total Retro elements | 203,734 | 68,317,130 | 6.55 | |
DNA transposons | — | 1,825,308 | 393,796,610 | 37.74 |
Rolling-circles | — | 39,648 | 4,199,431 | 0.4 |
Unclassified | — | 299,643 | 91,009,449 | 8.72 |
Total interspersed repeats | — | 1,568,085 | 553,713,189 | 53.07 |
Small RNA | — | 22,410 | 5,334,963 | 0.51 |
Satellites | — | 26,238 | 9,159,354 | 0.88 |
