Table 6 Annotation of non-coding RNA genes in large-scale loach genome.
Type | Copy Number | Average Length (bp) | Total Length (bp) | Percentage (%) | |
|---|---|---|---|---|---|
rRNA | 18S | 24 | 1,834.72 | 440,334 | 0.0422 |
28S | 224 | 4,433.68 | 993,145 | 0.0952 | |
5.8S | 240 | 153.59 | 36,861 | 0.00353 | |
5S | 9,638 | 118.98 | 1,146,770 | 0.110 | |
Total rRNA | 10,126 | 1,635.24 | 2,617,110 | 0.251 | |
snRNA | spliceosomal | 1,435 | 159.70 | 229,171 | 0.0220 |
scaRNA | 13 | 215.85 | 2,806 | 0.000269 | |
other | 9 | 64.22 | 578 | 0.0000554 | |
Total sncRNA | 1,457 | 146.59 | 232,555 | 0.0223 | |
snoRNA | — | 385 | 160.09 | 61,635 | 0.00591 |
miRNA | — | 2,660 | 88.25 | 234736 | 0.0225 |
tRNA | — | 23,781 | 77.25 | 1837114 | 0.176 |
