Table 2 Comprehensive categorization of repetitive sequences in the P. atrilineata genome.
From: A high-quality chromosome-level genome assembly of the mulberry looper, Phthonandria atrilineata
Type | number of elements | length occupied of sequence (bp) | Percentage (%) |
|---|---|---|---|
Interspersed repeats | 98,083,312 | 29.14% | |
Retroelements | 136348 | 29,022,430 | 8.62% |
SINEs: | 1985 | 240,601 | 0.07% |
LINEs: | 119,022 | 21,147,913 | 6.28% |
CRE/SLACS | 17,374 | 2,087,775 | 0.62% |
L2/CR1/Rex | 39,756 | 6,470,727 | 1.92% |
R1/LOA/Jockey | 10,374 | 4,388,255 | 1.30% |
R2/R4/NeSL | 1,731 | 481,158 | 0.14% |
RTE/Bov-B | 37,105 | 5,740,001 | 1.71% |
LTR elements: | 15,341 | 7,633,916 | 2.27% |
BEL/Pao | 3,104 | 2,205,946 | 0.66% |
Ty1/Copia | 1,633 | 540,007 | 0.16% |
Gypsy/DIRS1 | 10,001 | 4,794,074 | 1.42% |
Retroviral | 542 | 85,025 | 0.03% |
DNA transposons | 31,303 | 4,831,609 | 1.44% |
hob-Activator | 5,589 | 851,766 | 0.25% |
Tc1-IS630-Pogo | 14,859 | 2,043,012 | 0.61% |
MULE-MuDR | 64 | 6,432 | 0.00% |
PiggyBac | 1,386 | 324,668 | 0.10% |
Tourist/Harbinger | 321 | 59,701 | 0.02% |
Rolling-circles | 155,295 | 30,463,961 | 9.05% |
Unclassified: | 374,545 | 64,229,273 | 19.08% |
tRNA | 6,033 | 437,037 | 0.14% |
Satellites: | 6,878 | 866,291 | 0.26% |
Simple repeats: | 76,795 | 3,705,536 | 1.10% |
Low complexity: | 11,372 | 546,783 | 0.16% |
Total | 133,665,883 | 39.72% |
