Table 3 The information of Dipteris shenzhenensis genome annotation.
From: The chromosome-level genome assembly of Broad-Leaf Fern (Dipteris shenzhenensis)
Features | Values (Percentage in genome) |
|---|---|
Repetitive sequence | |
Total repeats (bp) | 1,367,223,663 (71.97%) |
SINE (bp) | 50,379 (0.003%) |
LINE (bp) | 188,784,747 (9.94%) |
LTR (bp) | 699,519,946 (36.82%) |
DNA (bp) | 424,143,792 (22.33%) |
Protein-code genes | |
Total genes | 26,471 |
Average transcript length(bp) | 16,709.49 |
Average CDS length(bp) | 1,163.68 |
Average exons per gene | 4.54 |
Average exon length(bp) | 256.51 |
Average intron length(bp) | 4,395.62 |
Non-coding RNA | |
miRNA | 5,063 |
tRNA | 4,700 |
rRNA | 580 |
snRNA | 872 |
Function annotation | |
Annotation | 24,485 (92.5%) |
NR | 23,182 (87.58%) |
Swissport | 17,423 (65.82%) |
KEGG | 17,009 (64.26%) |
InterPro | 23,449 (88.58%) |
Pfam | 18,228 (68.86%) |
GO | 13,441 (50.78%) |
