Table 2 Summary statistics of SNPs and InDels in each chromosome.

Chromosome	SNP count	SNP density (count/Kb)	InDel count	InDel density (count/Kb)
1	984,547	6.26	90,092	0.57
2	814,774	5.96	76,147	0.56
3	672,335	5.52	61,827	0.51
4	708,129	5.85	66,490	0.55
5	643,481	5.41	60,231	0.51
6	772,727	6.55	72,549	0.62
7	615,757	5.67	57,576	0.53
8	667,338	5.93	61,459	0.55
9	523,642	5.71	50,292	0.55
10	566,983	5.6	53,632	0.53
11	556,900	5.23	51,548	0.48
12	536,627	5.95	49,539	0.55
13	434,112	5.21	39,668	0.48
14	569,156	6.02	51,859	0.55
15	541,265	6.6	48,093	0.59
16	471,197	5.92	44,295	0.56
17	429,766	5.92	40,945	0.56
18	365,469	5.53	33,797	0.51
19	326,513	5.21	30,426	0.49
20	458,378	6.38	40,890	0.57
21	405,501	5.8	36,997	0.53
22	330,322	5.46	31,106	0.51
23	334,514	6.42	31,088	0.6
24	389,181	6.23	36,029	0.58
25	241,561	5.6	21,117	0.49
26	331,318	6.45	29,253	0.57
27	280,167	6	25,580	0.55
28	296,739	6.55	26,872	0.59
29	328,989	6.42	28,798	0.56

Variant density is calculated as the number of mutations per 1 kilobase (Kb) length.

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