Table 3 Transposable elements statistics for the P. rabaudi genome.
From: The telomere-to-telomere genome assembly and annotation of the rock carp (Procypris rabaudi)
RepBase TEs | TE Proteins | De novo | Combined TEs | |||||
|---|---|---|---|---|---|---|---|---|
Length (bp) | Percentage of genome (%) | Length (bp) | Percentage of genome (%) | Length (bp) | Percentage of genome (%) | Length (bp) | Percentage of genome (%) | |
DNA | 325,240,179 | 19.82 | 60,721,521 | 3.7 | 324,556,881 | 19.78 | 471,418,716 | 28.73 |
LINE | 78,592,292 | 4.79 | 60,219,958 | 3.67 | 66,979,306 | 4.08 | 99,985,827 | 6.09 |
SINE | 4,477,217 | 0.27 | 0 | 0 | 2,673,415 | 0.16 | 6,566,208 | 0.4 |
LTR | 67,481,429 | 4.11 | 35,474,236 | 2.16 | 66,481,793 | 4.05 | 99,055,451 | 6.04 |
Satellite | 33,280,782 | 2.03 | 0 | 0 | 9,525,001 | 0.58 | 40,232,007 | 2.45 |
Simple_repeat | 0 | 0 | 0 | 0 | 83,997 | 0.01 | 83,997 | 0.01 |
Other | 37,705 | 0 | 0 | 0 | 0 | 0 | 37,705 | 0 |
Unknown | 5,437,434 | 0.33 | 1,581 | 0 | 92,477,788 | 5.64 | 96,685,405 | 5.89 |
Total | 487,249,816 | 29.69 | 156,361,181 | 9.53 | 556,025,136 | 33.89 | 769,645,124 | 46.9 |
