Table 8 Statistical of the predicted transposable element in the P. pardalis genome.
From: Chromosome-level genome assembly and annotation of Pterygoplichthys pardalis
Type | Repbase TEs | TE protiens | De novo | Combined TEs | ||||
|---|---|---|---|---|---|---|---|---|
Length (bp) | % in genome | Length (bp) | % in genome | Length (bp) | % in genome | Length (bp) | % in genome | |
DNA | 264,951,677 | 17.57 | 32,487,312 | 2.15 | 455,290,359 | 30.20 | 499,766,710 | 33.15 |
LINE | 61,003,156 | 4.05 | 73,956,432 | 4.91 | 118,936,260 | 7.89 | 144,008,691 | 9.55 |
SINE | 3,835,338 | 0.25 | 0 | 0.00 | 26,813,655 | 1.78 | 29,267,760 | 1.94 |
LTR | 33,661,995 | 2.23 | 28,705,578 | 1.90 | 61,223,416 | 4.06 | 78,002,083 | 5.17 |
Other | 3,955,503 | 0.26 | 228,157 | 0.02 | 65,567,572 | 4.35 | 67,325,227 | 4.47 |
UnKnown | 1,273,026 | 0.08 | 0 | 0.00 | 217,454,064 | 14.42 | 218,339,022 | 14.48 |
Total | 358,195,998 | 23.76 | 135,338,199 | 8.98 | 911,029,930 | 60.43 | 940,547,025 | 62.39 |
