Table 2 Data columns of the Population table part of the GenDivRange dataset.
From: GenDivRange: A global dataset of geo-referenced population genetic diversity across species ranges
Data column name | Content |
|---|---|
Spec_id | GenDivRange species ID constructed as the first two letters of the genus and the species Latin name |
Study_id | Spec_id and an integer to identify the study |
Pop_id | Study_id and an integer to identify the population |
Spec_Latin_sub | Given if a population belongs to a different subspecies or variety |
Geog_1, ⋯ , Geog_6 | Spatial population identifiers. Geog_1 is always the country or the sea. The last value is often the population ID used in the study. |
Latitude | Population latitude coordinate in WGS84 |
Longitude | Population longitude coordinate in WGS85 |
N | Number of individuals genotyped per population |
A | Mean number of alleles per population across all loci |
A_mean | Mean number of alleles across all loci and all populations |
A_tot | Total number of alleles per population across all loci |
A_eff | Effective number of alleles per population across all loci |
A_private | Number of private alleles per population across all loci |
N_genot | Number of genotypes |
Ar | Mean allelic richness |
Ho | Observed heterozygosity |
He | Expected heterozygosity |
GD_Nei | Nei’s genetic diversity |
D_clonal | Clonal richness |
F_is | Inbreeding coefficient |
F_is_sig | Significance of F_is, S: p-values < 0.05, NS: p-value > 0.05 |
Ploidy | Level of ploidy: diploid, triploid, tetraploid |
