Fig. 1
From: Annotation of protein-coding genes in 49 diatom genomes from the Bacillariophyta clade
Taxonomy tree of selected Bacillariophyta genomes. This tree displays species of selected Bacillariophyta genome assemblies available from NCBI datasets between June 14th and 26th 2024. The tree was generated by PhyloT (https://phylot.biobyte.de/, August 21st 2024), visualised with iTol57. Species with representative genome assemblies with a previously existing annotation at NCBI are labelled in grey. Genomes that we annotated are colored in different shades of blue. From lightest to darkest blue: with BRAKER3; with BRAKER3 including proteins from the same species that were already available for an older assembly at NCBI or from PhycoCosm; with BRAKER2; with BRAKER2 including proteins from the same species that were already available for an older assembly at NCBI or from PhycoCosm. We excluded “uncultured” entries and those matching only two letters followed by a dot, e.g. “sp.”.
