Table 4 Repetitive sequences in the genome of Channa asiatica.
From: A chromosome-level reference genome assembly of the Small snakehead (Channa asiatica)
Type | Number | Length | % of the genome |
|---|---|---|---|
SINEs | 52,378 | 6,075,727 | 0.91% |
Penelope | 11,144 | 1,225,960 | 0.18% |
LINEs | 217,494 | 51,241,410 | 7.63% |
L2/CR1/Rex | 130,499 | 30,033,604 | 4.47% |
RTE/Bov-B | 55,609 | 13,608,596 | 2.03% |
LTR elements: | 63,707 | 9,839,264 | 1.47% |
DNA transposons | 280,482 | 44,242,069 | 6.59% |
hobo-Activator | 65,646 | 9,309,146 | 1.39% |
Tc1-IS630-Pogo | 132,761 | 26,061,260 | 3.88% |
Rolling-circles | 8404 | 1514325 | 0.23% |
Unclassified | 186,484 | 58,364,820 | 8.70% |
Small RNA | 10,439 | 5,340,364 | 0.80% |
Satellites | 5,722 | 5,522,450 | 0.82% |
Simple repeats | 261,983 | 10,206,576 | 1.52% |
Low complexity | 34,080 | 1,591,114 | 0.24% |
Total Repeats | 1,283,638 | 182,862,722 | 27.72% |
