Table 5 Statistics of protein-coding genes in C. macrophyllum genome.
From: Chromosomal level genome assembly of medicinal plant Chrysosplenium macrophyllum
Method | Software | Species | Gene number | Average gene length (bp) | Average CDS length (bp) | Average exon per gene | Average exon length (bp) | Average intron length (bp) |
|---|---|---|---|---|---|---|---|---|
Ab initio | GlimmmerHMM | 150,436 | 10,952.24 | 857.51 | 2.7 | 317.97 | 5,949.18 | |
AUGUSTUS | 66,466 | 3,219.44 | 1,796.38 | 5.34 | 336.58 | 328.11 | ||
Homology | Exonerate | Arabidopsis thaliana | 103,338 | 9,369.66 | 761.62 | 3.12 | 243.8 | 4,052.80 |
Chrysosplenium sinicum | 193,644 | 20,177.13 | 768.99 | 2.65 | 289.66 | 11,728.47 | ||
Kalanchoe fedtschenkoi | 112,888 | 7,579.61 | 717.39 | 2.97 | 241.55 | 3,483.49 | ||
Kalanchoe laxiflora | 117,964 | 8,271.90 | 722.07 | 2.95 | 244.66 | 3,869.03 | ||
Rhodiola crenulata | 146,034 | 20,869.55 | 774.2 | 2.6 | 297.86 | 12,566.12 | ||
RNAseq | TransDecoder | 36,897 | 6,218.27 | 955.74 | 6.37 | 441.03 | 634.69 | |
Integration | Maker | 38,930 | 6,033.53 | 1,139.71 | 6.09 | 236.5 | 902.62 | |
Final set | Anno-self | 62,921 | 4,086.31 | 1,122.66 | 4.76 | 302.17 | 702.4 | |
