Table 2 Statistical information of transposable element sequences.
Type | Number | Length | Rate (%) |
|---|---|---|---|
ClassI:Retroelement | 114,646 | 85,420,620 | 26.27 |
ClassI/DIRS | 1 | 52 | 0 |
ClassI/LINE | 16,780 | 4,891,308 | 1.5 |
ClassI/LTR/Caulimovirus | 2,926 | 4,487,562 | 1.38 |
ClassI/LTR/Copia | 25,311 | 25,234,323 | 7.76 |
ClassI/LTR/ERV | 1,436 | 92,978 | 0.03 |
ClassI/LTR/Gypsy | 28,668 | 37,303,639 | 11.47 |
ClassI/LTR/Ngaro | 201 | 14,545 | 0 |
ClassI/LTR/Pao | 131 | 11,238 | 0 |
ClassI/LTR/Unknown | 35,201 | 12,907,037 | 3.97 |
ClassI/SINE | 3,991 | 477,938 | 0.15 |
ClassII:DNA transposon | 87,335 | 27,554,351 | 8.47 |
ClassII/CACTA | 1,635 | 833,349 | 0.26 |
ClassII/Crypton | 17 | 854 | 0 |
ClassII/Dada | 192 | 10,142 | 0 |
ClassII/Ginger | 23 | 1,354 | 0 |
ClassII/Helitron | 12,561 | 4,429,763 | 1.36 |
ClassII/IS3EU | 163 | 9,418 | 0 |
ClassII/Kolobok | 183 | 13,321 | 0 |
ClassII/Maverick | 152 | 11,249 | 0 |
ClassII/Merlin | 126 | 6,339 | 0 |
ClassII/Mutator | 1,709 | 1,501,150 | 0.46 |
ClassII/P | 56 | 3,019 | 0 |
ClassII/PIF-Harbinger | 906 | 151,297 | 0.05 |
ClassII/PiggyBac | 31 | 1,386 | 0 |
ClassII/Tc1-Mariner | 599 | 126,723 | 0.04 |
ClassII/Unknown | 66,159 | 19,510,003 | 6 |
ClassII/Zisupton | 100 | 5,251 | 0 |
ClassII/hAT | 2,723 | 939,733 | 0.29 |
Unknown | 16 | 1,261 | 0 |
Total | 201,997 | 112,976,232 | 34.75 |