Table 2 Statistical information of transposable element sequences.

From: A high-quality chromosome-scale genome assembly of Xingan mandarin (Citrus reticulata ‘Xingan’), a primitive Mandarin type

Type

Number

Length

Rate (%)

ClassI:Retroelement

114,646

85,420,620

26.27

ClassI/DIRS

1

52

0

ClassI/LINE

16,780

4,891,308

1.5

ClassI/LTR/Caulimovirus

2,926

4,487,562

1.38

ClassI/LTR/Copia

25,311

25,234,323

7.76

ClassI/LTR/ERV

1,436

92,978

0.03

ClassI/LTR/Gypsy

28,668

37,303,639

11.47

ClassI/LTR/Ngaro

201

14,545

0

ClassI/LTR/Pao

131

11,238

0

ClassI/LTR/Unknown

35,201

12,907,037

3.97

ClassI/SINE

3,991

477,938

0.15

ClassII:DNA transposon

87,335

27,554,351

8.47

ClassII/CACTA

1,635

833,349

0.26

ClassII/Crypton

17

854

0

ClassII/Dada

192

10,142

0

ClassII/Ginger

23

1,354

0

ClassII/Helitron

12,561

4,429,763

1.36

ClassII/IS3EU

163

9,418

0

ClassII/Kolobok

183

13,321

0

ClassII/Maverick

152

11,249

0

ClassII/Merlin

126

6,339

0

ClassII/Mutator

1,709

1,501,150

0.46

ClassII/P

56

3,019

0

ClassII/PIF-Harbinger

906

151,297

0.05

ClassII/PiggyBac

31

1,386

0

ClassII/Tc1-Mariner

599

126,723

0.04

ClassII/Unknown

66,159

19,510,003

6

ClassII/Zisupton

100

5,251

0

ClassII/hAT

2,723

939,733

0.29

Unknown

16

1,261

0

Total

201,997

112,976,232

34.75