Table 7 Statistics of classification results of Tes.
From: De novo genome assembly of Yanbian cattle using PacBio HiFi and Hi-C combined with RNA-seq data
Type | RepeatMasker TEs Length (bp) | RepeatMasker TEs in genome (%) | RepeatProteinMask TEs Length (bp) | RepeatProteinMask TEs in genome (%) | De novo Length (bp) | De novo in genome (%) | Combined TEs Length (bp) | Combined TEs in genome (%) |
|---|---|---|---|---|---|---|---|---|
DNA | 78489517 | 2.68 | 967167 | 0.03 | 39599771 | 1.35 | 82361979 | 2.82 |
LINE | 793064427 | 27.12 | 560079794 | 19.15 | 667019928 | 22.81 | 909461188 | 31.1 |
SINE | 219809777 | 7.52 | 0 | 0 | 18809518 | 0.64 | 221264527 | 7.57 |
LTR | 171210108 | 5.85 | 5220432 | 0.18 | 124507039 | 4.26 | 188479177 | 6.45 |
Other | 1356 | 0 | 0 | 0 | 0 | 0 | 1356 | 0 |
Unknown | 1265023 | 0.04 | 0 | 0 | 3912024 | 0.13 | 5176905 | 0.18 |
Total TE | 1231307547 | 42.11 | 566217034 | 19.36 | 848607621 | 29.02 | 1322310331 | 45.22 |
