Table 8 The gene prediction results via different methods.
From: De novo genome assembly of Yanbian cattle using PacBio HiFi and Hi-C combined with RNA-seq data
Gene set | Number | Average gene length (bp) | Average CDS length (bp) | Average exon per gene | Average exon length (bp) | Average intron length (bp) |
|---|---|---|---|---|---|---|
denovo/AUGUSTUS | 24185 | 37331.68 | 1427.07 | 7.54 | 189.38 | 5493.71 |
denovo/Genscan | 42810 | 42428.64 | 1314.69 | 7.84 | 167.59 | 6006.55 |
homo/B.mutus | 15538 | 36181.91 | 1484.6 | 8.24 | 180.19 | 4793.16 |
homo/B.indicus | 15874 | 37712.33 | 1502.9 | 8.18 | 183.7 | 5042.13 |
homo/B.bubalis | 18764 | 39637.73 | 1537.43 | 8.25 | 186.37 | 5255.55 |
homo/B.bison | 16200 | 38858.87 | 1525.72 | 8.49 | 179.77 | 4986.24 |
homo/B.javanicus | 19290 | 38717.49 | 1529.8 | 8.08 | 189.42 | 5255.19 |
trans.orf/RNAseq | 15960 | 47378.82 | 1562.43 | 9.9 | 416.19 | 4863.15 |
MAKER | 21017 | 44901.17 | 1654.62 | 9.6 | 287.27 | 4900.94 |
PASA | 20421 | 48425.27 | 1688.59 | 9.85 | 322.13 | 5040.47 |
