Table 1 Number of expressed ncRNAs.
From: Non-coding RNA profiling in BRAFV600E-mutant cutaneous melanoma before and after Spry1 depletion
Sample Name | sncRNAs | lncRNAs |
|---|---|---|
Parental BRAF-V600E mutant CM cell lines | 5172 | 29224 |
Spry1KO BRAF-V600E mutant CM clones | 5064 | 29115 |
Sample Name | sncRNAs | lncRNAs | |||||||
|---|---|---|---|---|---|---|---|---|---|
miRNA | piRNA | rRNA | snoRNA | snRNA | tRNA | novel mirna | lncRNA | circRNA | |
Mel_593_Spry1KO_cl2_rep1 | 1489 | 725 | 71 | 588 | 997 | 425 | 992 | 41500 | 5802 |
Mel_593_Spry1KO_cl2_rep2 | 1349 | 666 | 70 | 506 | 958 | 419 | 812 | 42735 | 5431 |
Mel_593_Spry1KO_cl2_rep3 | 1369 | 687 | 70 | 527 | 924 | 422 | 864 | 43508 | 4948 |
Mel_593_parental_rep1 | 1432 | 1016 | 76 | 615 | 1202 | 431 | 848 | 42514 | 5463 |
Mel_593_parental_rep2 | 1402 | 714 | 71 | 580 | 989 | 432 | 789 | 43557 | 4928 |
Mel_593_parental_rep3 | 1465 | 711 | 73 | 545 | 920 | 434 | 885 | 42626 | 5319 |
Mel_599_Spry1KO_cl9_rep1 | 1363 | 669 | 72 | 542 | 836 | 425 | 897 | 13581 | 5596 |
Mel_599_Spry1KO_cl9_rep2 | 1366 | 658 | 72 | 515 | 1011 | 424 | 855 | 14705 | 5885 |
Mel_599_Spry1KO_cl9_rep3 | 1439 | 686 | 71 | 548 | 881 | 434 | 967 | 15109 | 5969 |
Mel_599_parental_rep1 | 1417 | 664 | 71 | 528 | 835 | 433 | 916 | 12689 | 4955 |
Mel_599_parental_rep2 | 1576 | 751 | 73 | 567 | 939 | 432 | 1053 | 13372 | 5120 |
Mel_599_parental_rep3 | 1569 | 782 | 74 | 547 | 992 | 433 | 1084 | 13385 | 5166 |
Mel_611_Spry1KO_cl4_rep1 | 1595 | 815 | 72 | 630 | 1081 | 433 | 1080 | 15577 | 5965 |
Mel_611_Spry1KO_cl4_rep2 | 1499 | 684 | 72 | 548 | 953 | 430 | 905 | 11711 | 4922 |
Mel_611_Spry1KO_cl4_rep3 | 1472 | 750 | 72 | 538 | 914 | 431 | 944 | NA | NA |
Mel_611_parental_rep1 | 1402 | 725 | 73 | 526 | 899 | 429 | 846 | 15291 | 5803 |
Mel_611_parental_rep2 | 1417 | 757 | 71 | 565 | 950 | 430 | 835 | 15634 | 5886 |
Mel_611_parental_rep3 | 1485 | 803 | 74 | 568 | 1010 | 434 | 879 | NA | NA |
