Table 8 Annotation of Non-Coding RNAs in H. salicifolia.
From: Chromosome-level genome assembly of Hippophae salicifolia
Family | Number | Average length(bp) | Total length(bp) | (%) in genome |
|---|---|---|---|---|
tRNA | 748 | 74 | 56,081 | 0.0051 |
miRNA | 196 | 127 | 25,012 | 0.0023 |
sRNA | 1 | 374 | 374 | 0 |
antisense | 19 | 166 | 3,156 | 0.0003 |
ribozyme | 1 | 245 | 245 | 0 |
Intron | 117 | 128 | 15,014 | 0.0014 |
Cis-reg:leader | 1 | 118 | 118 | 0 |
Cis-reg:riboswitch | 1 | 132 | 132 | 0 |
Cis-reg:other | 7 | 45 | 320 | 0 |
Cis-reg:total | 9 | 63 | 570 | 0.0001 |
snRNA:CD-box | 5,804 | 106 | 616,955 | 0.0557 |
snRNA:HACA-box | 56 | 126 | 7079 | 0.0006 |
snRNA:splicing | 90 | 139 | 12,596 | 0.0011 |
snRNA:total | 5,950 | 106 | 636,630 | 0.0574 |
18S_rRNA | 117 | 1,804 | 211,156 | 0.0191 |
28S_rRNA | 138 | 3,726 | 514,273 | 0.0464 |
5.8S_rRNA | 143 | 153 | 21,961 | 0.002 |
5S_rRNA | 5,526 | 111 | 615,476 | 0.0555 |
rRNA:Total | 5,924 | 230 | 1,362,866 | 0.123 |
other | 6,882 | 233 | 16,06,088 | 0.1449 |
Total | 19,847 | 173 | 2,287,089 | 0.2063 |
