Table 2 Statistics of the final SNPs and InDels identified from each chromosome in the WGS data of three goat breeds in China.
From: Whole-genome sequencing and variants data of 304 indigenous goats from Southwest China
Chromosome | Length (Mb) | SNP | InDel | ||
|---|---|---|---|---|---|
Count | Density (bp/SNP) | Count | Density (bp/InDel) | ||
1 | 157.4 | 1770112 | 88 | 201234 | 782 |
2 | 136.5 | 1424164 | 95 | 163465 | 835 |
3 | 120.0 | 1214381 | 98 | 137874 | 870 |
4 | 120.7 | 1326521 | 91 | 148194 | 814 |
5 | 119.0 | 1233239 | 96 | 139713 | 851 |
6 | 117.6 | 1357081 | 86 | 154921 | 759 |
7 | 108.4 | 1111776 | 97 | 128225 | 845 |
8 | 112.7 | 1198140 | 94 | 135742 | 830 |
9 | 91.6 | 962314 | 95 | 111303 | 822 |
10 | 101.1 | 1060818 | 95 | 122749 | 823 |
11 | 106.2 | 1030307 | 103 | 116785 | 909 |
12 | 87.3 | 982111 | 88 | 115006 | 758 |
13 | 83.0 | 785927 | 105 | 88099 | 942 |
14 | 94.7 | 1025652 | 92 | 116434 | 813 |
15 | 81.9 | 928368 | 88 | 102921 | 795 |
16 | 79.4 | 829633 | 95 | 93951 | 844 |
17 | 71.1 | 724016 | 98 | 83763 | 849 |
18 | 67.3 | 649720 | 103 | 78880 | 852 |
19 | 62.5 | 549202 | 113 | 63190 | 989 |
20 | 71.8 | 811240 | 88 | 89932 | 798 |
21 | 69.4 | 727034 | 95 | 82195 | 844 |
22 | 60.3 | 567527 | 106 | 66487 | 906 |
23 | 48.9 | 565294 | 86 | 67174 | 727 |
24 | 62.3 | 689260 | 90 | 78027 | 798 |
25 | 42.9 | 389670 | 109 | 42612 | 1005 |
26 | 51.4 | 552528 | 93 | 61220 | 839 |
27 | 44.7 | 490496 | 91 | 57102 | 782 |
28 | 44.7 | 532607 | 83 | 57459 | 777 |
29 | 51.3 | 567586 | 90 | 60384 | 850 |
