Table 1 Sequencing data used for the Anqing Six-end-white pig genome assembly, which include the sequencing types, sequencing platform, sequencing tissue, average read length, total bases and sequencing coverage.
Data | Sequencer | Tissue | Average read length(bp) | Total bases (Gb) | Sequencing depth |
|---|---|---|---|---|---|
HiFi reads | Pacbio_Revio | Blood | 18,509.21 | 229,34 | 94.89 |
short reads (paired-end) | BGISEQ DNBseq-T7 | Blood | 150 | 129.62 | 51.85 |
Hi-C reads | BGISEQ DNBseq-T7 | Blood | 150 | 249.05 | 103.04 |
RNA-Seq reads | Illumina NovaSeq 6000 | heart, liver, spleen, lung, kidney, stomach, longissimus dorsi muscle, adipose, duodenum, jejunum, ileum, cecum, colon and rectum | 150 | An average of 10.97 Gb for each tissue | — |
