Table 4 The detail information of repetitive sequences in the Anqing Six-end-white pig genome.
RepBase TEs | TE Proteins | De novo | Combined TEs | |||||
|---|---|---|---|---|---|---|---|---|
Length (bp) | %in Genome | Length (bp) | %in Genome | Length (bp) | %in Genome | Length (bp) | %in Genome | |
DNA | 75,137,988 | 2.82 | 3,918,537 | 0.15 | 27,754,199 | 1.04 | 76,552,602 | 2.88 |
LINE | 504,231,281 | 18.95 | 234,087,295 | 8.8 | 623,860,264 | 23.45 | 761,043,543 | 28.61 |
SINE | 22,069,496 | 0.83 | 0 | 0 | 19,348,005 | 0.73 | 31,208,933 | 1.17 |
LTR | 142,420,859 | 5.35 | 6,495,402 | 0.24 | 72,484,253 | 2.72 | 145,581,048 | 5.47 |
Satellite | 156,660,535 | 5.89 | 0 | 0 | 3,766,729 | 0.14 | 156,954,886 | 5.9 |
Other | 2,398 | 0 | 459 | 0 | 0 | 0 | 2,857 | 0 |
Unknown | 1,202,506 | 0.05 | 8,610 | 0 | 1,400,927 | 0.05 | 2,612,043 | 0.1 |
Total | 891,443,376 | 33.51 | 244,476,387 | 9.19 | 747,749,479 | 28.11 | 1,157,828,521 | 43.52 |
