Table 5 The detail information of protein-coding gene of Anqing Six-end-white pig.
Method | Gene set | Protein coding gene number | Average gene length (bp) | Average CDS length (bp) | Average exon per gene | Average exon length (bp) | Average intron length (bp) |
|---|---|---|---|---|---|---|---|
De novo | Genscan | 55,108 | 27,992 | 1,061 | 6.59 | 160.96 | 4,816 |
AUGUSTUS | 29,226 | 25,201 | 1,011 | 6.03 | 167.53 | 4,807 | |
Homolog | Phacochoerus africanus | 50,599 | 48,483 | 1,967 | 11.58 | 169.8 | 4,395 |
Sus Scrofa | 66,249 | 58,367 | 2,034 | 12.05 | 168.8 | 5,097 | |
Mus musculus | 96,754 | 57,868 | 2,037 | 11.84 | 172.03 | 5,149 | |
Homo sapiens | 145,739 | 56,242 | 2,021 | 12.07 | 167.36 | 4,896 | |
Trans ORF | RNAseq | 13,190 | 62,793 | 1,855 | 11.62 | 490.18 | 5,378 |
BUSCO | 12,233 | 40,934 | 1,862 | 11.05 | 168.56 | 3,889 | |
MAKER | 22,200 | 50,136 | 1,436 | 9.34 | 447.28 | 5,508 | |
HiFAP | 20,809 | 46,025 | 1,649 | 9.48 | 325.69 | 5,063 | |
