Table 2 Statistics of Ormosia boluoensis genome assembly.
From: A chromosome-scale assembly of Ormosia boluoensis (Fabaceae)
Contig statistics of initial assembly using Nextdenovo | |
|---|---|
The length of sequence (bp) | The order of sequence length |
N10 = 43571457 | L10 = 3 |
N20 = 34757770 | L20 = 8 |
N30 = 28126041 | L30 = 13 |
N40 = 22201282 | L40 = 20 |
N50 = 16933043 | L50 = 28 |
N60 = 15213351 | L60 = 38 |
N70 = 11829838 | L70 = 51 |
N80 = 8920529 | L80 = 67 |
N90 = 4468952 | L90 = 93 |
N100 = 24824 | L100 = 286 |
Total length | 1638935015 bp |
Average length | 5730542 bp |
Largest length | 62261387 bp |
Minimum length | 24824 bp |
Scaffold statistics after Hi-C scaffolding | |
N10 = 236629900 | L10 = 1 |
N20 = 230128291 | L20 = 2 |
N30 = 220340375 | L30 = 3 |
N40 = 220340375 | L40 = 3 |
N50 = 201058012 | L50 = 4 |
N60 = 194964083 | L60 = 5 |
N70 = 173489955 | L70 = 6 |
N80 = 173489955 | L80 = 6 |
N90 = 163317618 | L90 = 7 |
N100 = 1000 | L100 = 172 |
Total length | 1565663440 bp |
Average length | 9102694.42 bp |
Largest length | 236629900 bp |
Minimum length | 1000 bp |
GC content | 34.60% |
Percentage of total repeat sequences | 75.06% |
Number of predicted genes | 51,822 |
BUSCO completeness at genome level | 98.2% |
BUSCO completeness at gene level | 96.7% |
LAI values | 13.23 |
Quality value (QV) from Merqury | 30.01 |
Mapping ratio of long WGS reads | 98.52% |
Mapping ratio of short WGS reads | 94.99% |
Mapping ratio of RNA-seq reads | 94.82% |
