Table 3 Repeat content of the Hi-C scaffolded assembly by EDTA.
From: A chromosome-scale assembly of Ormosia boluoensis (Fabaceae)
Repeat class | Repeat family | Number of elements | Total length (bp) | Percentage in the genome |
|---|---|---|---|---|
LTR | 973174 | 962829486 | 61.50% | |
Copia | 190769 | 174873107 | 11.17% | |
Gypsy | 457370 | 555597256 | 35.49% | |
unknown | 325035 | 232359123 | 14.84% | |
TIR | 302860 | 105292142 | 6.74% | |
CACTA | 83831 | 30165425 | 1.93% | |
Mutator | 126278 | 40047851 | 2.56% | |
PIF_Harbinger | 19125 | 6352392 | 0.41% | |
Tc1_Mariner | 14514 | 4202165 | 0.27% | |
hAT | 59112 | 24524309 | 1.57% | |
nonTIR | 107273 | 33274526 | 2.13% | |
helitron | 107273 | 33274526 | 2.13% | |
Total | 1383307 | 1101396154 | 70.35% |
