Table 1 Summary of haplotype-resolved genome assembly of A. roxburghii.
From: A haplotype-resolved genome assembly of Anoectochilus roxburghii
Sequencing | A. roxburghii | |
|---|---|---|
PacBio Sequel II sequencing | ||
Raw data (Gb) | 162.58 | |
Sequencing depth (×) | 78 | |
Average reads length (bp) | 17,484 | |
Reads N50 (bp) | 17,251 | |
Hi-C sequencing | ||
Clean data (Gb) | 188.98 | |
Sequencing depth (×) | 90 | |
Illumina sequencing | ||
Clean data (Gb) | 124.55 | |
Sequencing depth (×) | 60 | |
Haplotype-resolved chromosomal-level assembly | ||
Haplotype A | Haplotype B | |
Assembly size | 2,064,327,351 | 2,067,046,529 |
Number of contigs | 2,771 | 1,449 |
Contig N50 (Mb) | 22.72 | 22.17 |
Scaffold N50 (Mb) | 104.19 | 105.51 |
GC content (%) | 39.01% | 39.00% |
Sequences anchored to chromosomes | 2,060,869,048 | 2,036,472,919 |
BUSCO completeness of assembly (%) | 93.5% | 92.9% |
Total number of genes | 26,239 | 26,324 |
