Table 2 Statistics of repetitive sequences in haplotype A genome of A. roxburghii.
From: A haplotype-resolved genome assembly of Anoectochilus roxburghii
Type | Total length (bp) | % of genome | ||
|---|---|---|---|---|
Class I TE | LTR | Copia | 172,418,197 | 8.49% |
Gypsy | 946,162,439 | 46.60% | ||
others | 28,175,460 | 1.39% | ||
LINE | 37,242,708 | 1.83% | ||
SINE | 10,284,768 | 0.51% | ||
Class II TE | DNA | 222,785,015 | 10.97% | |
Satellite | 139,599,879 | 6.88% | ||
hAT | 63,329,655 | 3.12% | ||
MULE-MuDR | 40,727,304 | 2.01% | ||
CMC-EnSpm | 14,234,170 | 0.70% | ||
Simple repeat | 37,628,816 | 1.85% | ||
Unknown | 31,892,486 | 1.57% | ||
Total | 1,554,150,275 | 76.54% | ||
