Table 3 Statistics of repetitive sequences in haplotype B genome of A. roxburghii.
From: A haplotype-resolved genome assembly of Anoectochilus roxburghii
Type | Total length (bp) | % of genome | ||
|---|---|---|---|---|
Class I TE | LTR | Copia | 183,497,769 | 9.03% |
Gypsy | 1,001,206,981 | 49.24% | ||
others | 25,175,842 | 1.24% | ||
LINE | 41,327,644 | 2.03% | ||
SINE | 10,566,284 | 0.52% | ||
Class II TE | DNA | 201,779,596 | 9.92% | |
Satellite | 77,801,541 | 3.83% | ||
hAT | 63,129,069 | 3.10% | ||
MULE-MuDR | 6,488,596 | 0.32% | ||
CMC-EnSpm | 15,194,022 | 0.75% | ||
Simple repeat | 38,237,296 | 1.88% | ||
Unknown | 34,223,202 | 1.68% | ||
Total | 1,559,008,887 | 76.68% | ||
