Table 3 Repetitive element annotations in the genome of S. rivulatus.
From: A chromosome-level reference genome of the surf parrotfish (Scarus rivulatus)
Type of repeats | Length (bp) | % of genome |
|---|---|---|
SINEs | 12,707,630 | 0.80 |
LINEs | 70,727,929 | 4.46 |
L2/CR1/Rex | 47,210,726 | 2.98 |
R1/LOA/Jockey | 605,581 | 0.04 |
R2/R4/NeSL | 2,009,336 | 0.13 |
RTE/Bov-B | 4,783,642 | 0.30 |
L1/CIN4 | 11,937,511 | 0.75 |
LTR | 186,229,235 | 11.75 |
BEL/Pao | 751,023 | 0.05 |
Ty1/Copia | 14,710,829 | 0.93 |
Gypsy/DIRS1 | 117,490,550 | 7.41 |
Retroviral | 17,081,635 | 1.08 |
DNA transposons | 334,859,781 | 21.13 |
hobo-Activator | 128,247,738 | 8.09 |
Tc1-IS630-Pogo | 123,174,615 | 7.77 |
PiggyBac | 197,626 | 0.01 |
Tourist/Harbinger | 3,988,953 | 0.25 |
Rolling-circles | 277,360 | 0.02 |
Unclassified | 149,994,023 | 9.47 |
Simple_repeat | 16,608,766 | 1.05 |
Low complexity | 2,554,292 | 0.16 |
Total | 773,959,016 | 48.84 |
