Table 3 Scaffold-level assembly statistics for C. macrocephalus.
From: Chromosome-scale, haplotype-resolved genome of Bighead catfish for conservation and aquaculture
Scaffold name | Scaffold length (Mb) | Error 21-mer number | Quality value (QV) | Gap number | Left telomere motif length [5′ AACCCT], and strand orientation | Right telomere motif length [AGGGTT 3′], and strand orientation | S-AQI structural accuracy index (%) |
|---|---|---|---|---|---|---|---|
fClaMac_1_LG_01 | 48.40 | 3242 | 54.80 | 23 | 507 (−) | — | 93.24 |
fClaMac_1_LG_02 | 46.18 | 6400 | 51.57 | 24 | 607 (+) | 1016 (−) | 73.94 |
fClaMac_1_LG_03 | 40.54 | 6784 | 50.70 | 20 | — | 215 (−) | 91.18 |
fClaMac_1_LG_04 | 37.64 | 4160 | 52.77 | 23 | 147 (+) | 122 (−) | 100.00 |
fClaMac_1_LG_05 | 37.19 | 9007 | 49.24 | 23 | 579 (+) | 190 (−) | 93.23 |
fClaMac_1_LG_06 | 37.01 | 5548 | 51.40 | 25 | — | — | 84.09 |
fClaMac_1_LG_07 | 34.64 | 7089 | 49.89 | 25 | 214 (+) | — | 93.24 |
fClaMac_1_LG_08 | 47.03 | 12668 | 48.72 | 32 | 170 (+) | 190 (−) | 89.37 |
fClaMac_1_LG_09 | 28.28 | 7205 | 49.22 | 13 | 153 (+) | 1630 (−) | 81.31 |
fClaMac_1_LG_10 | 29.87 | 12042 | 47.04 | 24 | 282 (+) | — | 95.23 |
fClaMac_1_LG_11 | 25.51 | 6087 | 49.35 | 19 | 1008 (+) | — | 80.92 |
fClaMac_1_LG_12 | 28.04 | 8367 | 48.28 | 21 | 124 (+) | — | 95.73 |
fClaMac_1_LG_13 | 24.08 | 3715 | 51.28 | 18 | 377 (+) | — | 86.62 |
fClaMac_1_LG_14 | 21.22 | 4707 | 49.73 | 13 | — | 136 (−) | 94.05 |
fClaMac_1_LG_15 | 25.46 | 3974 | 51.15 | 20 | 127 (+) | 115 (−) | 95.00 |
fClaMac_1_LG_16 | 24.80 | 4054 | 50.94 | 15 | — | 109 (−) | 73.65 |
fClaMac_1_LG_17 | 22.98 | 67523 | 38.50 | 15 | 120 (+) | — | 77.54 |
fClaMac_1_LG_18 | 24.80 | 2060 | 53.92 | 13 | — | — | 90.26 |
fClaMac_1_LG_19 | 31.01 | 3329 | 52.83 | 22 | — | 363 (−) | 92.45 |
fClaMac_1_LG_20 | 30.49 | 4074 | 51.82 | 15 | — | 406 (−) | 83.79 |
fClaMac_1_LG_21 | 28.95 | 4609 | 51.20 | 28 | — | — | 100.00 |
fClaMac_1_LG_22 | 33.48 | 2784 | 54.01 | 23 | — | 904 (−) | 92.37 |
fClaMac_1_LG_23 | 31.45 | 8435 | 48.86 | 16 | — | 790 (−) | 86.84 |
fClaMac_1_LG_24 | 28.07 | 4984 | 50.66 | 12 | 423 (+) | — | 88.33 |
fClaMac_1_LG_25 | 38.33 | 6711 | 50.64 | 24 | — | — | 96.55 |
fClaMac_1_LG_26 | 40.06 | 4967 | 52.16 | 21 | 556 (+) | 604 (−) | 87.85 |
fClaMac_1_LG_27 | 29.17 | 2146 | 54.54 | 13 | — | — | 74.96 |
fClaMac_2_LG_01 | 51.51 | 2649 | 55.53 | 17 | — | — | 89.28 |
fClaMac_2_LG_02 | 44,94 | 6893 | 51.16 | 25 | 255 (+) | — | 71.62 |
fClaMac_2_LG_03 | 39.44 | 8894 | 49.59 | 16 | — | — | 83.57 |
fClaMac_2_LG_04 | 38.01 | 6912 | 50.56 | 18 | 293 (+) | 526 (−) | 88.17 |
fClaMac_2_LG_05 | 38.16 | 3424 | 53.46 | 23 | — | 125 (−) | 78.26 |
fClaMac_2_LG_06 | 38.66 | 2675 | 54.33 | 17 | — | — | 80.86 |
fClaMac_2_LG_07 | 33.93 | 5651 | 50.82 | 17 | 169 (+) | — | 89.91 |
fClaMac_2_LG_08 | 47.19 | 10458 | 49.57 | 29 | 174 (+) | 190 (−) | 89.44 |
fClaMac_2_LG_09 | 28.80 | 10239 | 47.57 | 14 | 641 (+) | — | 91.91 |
fClaMac_2_LG_10 | 29.07 | 5001 | 50.86 | 14 | 268 (+) | — | 95.24 |
fClaMac_2_LG_11 | 25.76 | 6627 | 48.93 | 21 | — | — | 89.75 |
fClaMac_2_LG_12 | 30.93 | 6915 | 48.79 | 19 | — | — | 82.58 |
fClaMac_2_LG_13 | 23.66 | 3213 | 51.91 | 15 | — | 100 (+) | 86.65 |
fClaMac_2_LG_14 | 21.06 | 3487 | 50.93 | 7 | — | — | 100.00 |
fClaMac_2_LG_15 | 24.93 | 7673 | 48.30 | 17 | 134 (+) | 137 (−) | 85.58 |
fClaMac_2_LG_16 | 24.83 | 3011 | 52.28 | 10 | — | — | 81.74 |
fClaMac_2_LG_17 | 22.34 | 2012 | 53.64 | 15 | 175 (+) | — | 85.99 |
fClaMac_2_LG_18 | 24.44 | 1986 | 54.05 | 11 | — | — | 100.00 |
fClaMac_2_LG_19 | 30.86 | 3566 | 52.52 | 16 | — | 362 (−) | 90.62 |
fClaMac_2_LG_20 | 34.51 | 2384 | 53.54 | 13 | — | — | 100.00 |
fClaMac_2_LG_21 | 27.99 | 2550 | 53.57 | 13 | — | — | 100.00 |
fClaMac_2_LG_22 | 33.35 | 4588 | 51.82 | 16 | 128 (+) | 908 (−) | 88.64 |
fClaMac_2_LG_23 | 31.45 | 9701 | 48.24 | 6 | 214 (+) | 793 (−) | 82.68 |
fClaMac_2_LG_24 | 27.39 | 2840 | 53.03 | 6 | 114 (+) | — | 93.87 |
fClaMac_2_LG_25 | 37.88 | 7891 | 49.99 | 15 | — | — | 87.01 |
fClaMac_2_LG_26 | 40.17 | 11271 | 48.68 | 13 | — | 607 (−) | 88.08 |
fClaMac_2_LG_27 | 29.56 | 1236 | 56.97 | 12 | 155 (+) | — | 90.78 |
MT_from_NC_046749 | 0.02 | — | — | — | — | — | — |
