Table 4 Transposable elements for the haplotype 2 of Clarias macrocephalus.
From: Chromosome-scale, haplotype-resolved genome of Bighead catfish for conservation and aquaculture
Transposable Elements Superfamily | Number of transposable elements |
|---|---|
LINE | — |
I | 128 |
L1 | 547 |
L2 | 1,129 |
Rex | 556 |
LINE/Unknown | 7,412 |
LTR | — |
Bel_Pao | 151 |
Copia | 53 |
Gypsy | 68,215 |
LTR/Unknown | 134,660 |
TIR | — |
CACTA | 357,388 |
Mutator | 172,578 |
PIF_Harbinger | 36,538 |
Tc1_Mariner | 41,500 |
hAT | 80,189 |
PiggyBac | 758 |
Polinton | 281 |
NonLTR | — |
DIRS_YR | 678 |
Penelope | 417 |
NonTIR | — |
Helitron | 166,251 |
Repeat Fragment | 78,900 |
Total Interspersed | 1,148,329 |
