Table 2 Summary of whole genome resequencing data.
From: Whole-genome variant of 220 Tibetan sheep from the Qinghai-Tibetan Plateau
Population | Raw reads | Clean reads | Clean data rate(%) | Clean Q20 rate(%) | Clean Q30 rate(%) | Clean GC content(%) | Mapped Reads | Mapped Rate(%) |
|---|---|---|---|---|---|---|---|---|
AW | 95,701,170-137,835,824 | 94,678,924-136,045,192 | 98.43-99.08 | 95.36-97.74 | 87.83-93.42 | 43.95-44.84 | 94,261,765-135,881,157 | 99.56-99.96 |
GB | 94,298,058-119,696,088 | 93,163,830-118,156,734 | 98.26-99.13 | 96.95-97.69 | 91.55-93.18 | 43.54-44.79 | 93,117,006-118,097,420 | 98.34-99.96 |
GBB | 94,669,372-161,355,650 | 93,637,276-159,027,818 | 98.36-98.98 | 95.19-97.70 | 87.41-93.27 | 44.47-45.57 | 93,487,334-158,823,568 | 99.77-99.95 |
GJ | 98,599,898-161,943,674 | 97,646,642-160,075,082 | 98.31-99.18 | 94.25-97.55 | 85.87-92.92 | 41.83-45.41 | 97,593,705-159,926,799 | 99.78-99.97 |
HB | 93,872,024-122,164,806 | 92,772,578-120,126,382 | 98.11-98.99 | 95.67-97.71 | 88.39-93.35 | 44.34-45.45 | 92,734,799-120,008,442 | 99.83-99.96 |
KC | 94,082,272-145,093,246 | 92,906,510-143,021,248 | 98.19-99.15 | 94.05-97.41 | 85.32-92.50 | 44.46-45.24 | 92,807,922-142,810,713 | 99.71-99.93 |
OL | 93,811,744-142,172,432 | 92,911,336-140,093,662 | 97.95-99.04 | 95.86-97.52 | 88.76-92.93 | 44.67-45.69 | 92,861,844-139,844,041 | 99.82-99.95 |
QK | 93,931,324-125,795,418 | 92,399,782-124,477,264 | 98.26-98.95 | 96.70-97.72 | 90.91-93.37 | 43.45-45.29 | 92,242,120-124,169,989 | 99.48-99.88 |
TS | 94,844,408-145,690,888 | 93,843,280-143,920,534 | 98.09-99.12 | 96.76-97.79 | 91.27-93.45 | 43.71-45.35 | 93,732,435-143,830,294 | 98.63-99.94 |
WT | 94,262,028-127,932,770 | 93,349,410-126,557,328 | 98.36-99.04 | 96.24-98.13 | 90.21-94.27 | 43.65-44.91 | 93,073,816-126,432,906 | 99.60-99.94 |
ZSJ | 91,865,506-119,984,184 | 90,788,858-118,826,332 | 98.64-99.23 | 94.35-97.50 | 85.77-92.90 | 43.70-45.40 | 90,325,988-118,588,175 | 99.30-99.89 |
